A Snakemake workflow and MrBiomics module for performing and visualizing differential analyses of NGS data powered by the R package limma.

A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.

Automatic descriptor selection and volcano curve generation

Template R code for bioinformatics analysis pipeline of transcriptomic Illumina datasets

A shiny app for custom analyzes of preprocessed omics data

Data for volcano3D package

a polar representation of multiple volcano plots

Biplots, Volcano plots, PCA plots, Heatmaps and more Computational Genomics data created and visualized during University of Pittsburgh course, Computational Biology (BIOSC1540), with Dr. Miler Lee

Reusable R/Bash scripts for RNA-Seq (DESeq2), VCF filtering, and multi-omics visualization (heatmaps, volcano plots)

Useful R functions for Multi-omics analyses

Analyse d'expression différentielle de gènes avec le logiciel R

Transparent statistical pipeline for identifying biomarkers associated with neurological disease progression. Spearman correlations, Mann-Whitney group comparisons, volcano plots, and FDR correction.

This project visualizes Treatment-Emergent Adverse Events(TEAE) in a single graph.

Bioinformatics and statistical analysis of peer-reviewed papers in Dr. Martha Bhattacharya's lab at the University of Arizona. Overlaps with Itch, Endo, and Hippo repos

A Shiny interface to analyse Olink data

A multi-omics analysis framework for cancer survival prediction (KIRC/LUSC). Utilizes LASSO feature selection, Cox Regression, and Volcano plots to identify genomic biomarkers and predict patient outcomes from TCGA data.

interactive volcano plots in shiny application (R)

Tuxedo-procedure-for-RNA-SEQ-analysis

RNA sequencing, bioinformatics, and data analysis involved in the Itch project for Dr. Martha Bhattacharya's Lab at the University of Arizona

Analysis and Visualization for the Global Terrorism Dataset including ANOVA tests volcano plots and Topological Data Analysis applications https://www.start.umd.edu & https://www.kaggle.com/START-UMD/gtd#globalterrorismdb_0718dist.csv